Output Files - Revision history

RobertKenward: /* Statistics files */

2014-12-11T13:01:33Z

Statistics files

← Older revision		Revision as of 13:01, 11 December 2014
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	==== Statistics files ====		==== Statistics files ====

	These are files with column headers saved in comma-separated variable ('',csv'') format that can be opened in the Statistics window, double-clicked to open in Microsoft Excel or imported to an alternative spreadsheet.		These are files with column headers saved in comma-separated variable (''.csv'') format that can be opened in the Statistics window, double-clicked to open in Microsoft Excel or imported to an alternative spreadsheet.

	==== Ranges files ====		==== Ranges files ====

Admin at 11:51, 8 November 2014

2014-11-08T11:51:51Z

← Older revision		Revision as of 11:51, 8 November 2014
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	<u>Conve<b>X</b> polygons</u>		<u>Conve<b>X</b> polygons</u>

	~~peeled from~~:		Peel centre:

	: ~~f =~~ <b>f</b>ocal site <br />		: <b>f</b>ocal site <br />
	: ~~h =~~ <b>h</b>armonic mean <br />		: <b>h</b>armonic mean <br />
	: ~~k =~~ <b>k</b>ernel centre <br />		: <b>k</b>ernel centre <br />
	: ~~a =~~ <b>a</b>rithmetic mean centre <br />		: <b>a</b>rithmetic mean centre <br />
	: ~~r =~~ <b>r</b>ecalculated arithmetic mean <br />		: <b>r</b>ecalculated arithmetic mean <br />

	<u>Conca<b>V</b>e polygons</u>		<u>Conca<b>V</b>e polygons</u>

	~~edge~~ restriction:		Edge restriction:

	: <b>01</b> to <b>09</b> for 0.1 to 0.9, or in metres : 10m		: <b>01</b> to <b>09</b> for 0.1 to 0.9, or in metres : 10m
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	conca<b>V</b>e or conve<b>X</b><br />		conca<b>V</b>e or conve<b>X</b><br />
	~~joining~~ priority : <b>n</b>earest neighbour, centroid<br />		Joining priority:
			: <b>n</b>earest neighbour, centroid<br />
	<b>o</b>bjective cores :<br />		<b>o</b>bjective cores :<br />
	: outlier exclusion: <b>t</b>runcation of distance distribution, iterative at 0.1,0.5,1% : <b>i01</b>, <b>i05</b>, <b>i10</b><br />		: outlier exclusion:
	for convex: <b>s</b>eparate polygons, <b>i</b>nclusive polygon<br />		: <b>t</b>runcation of distance distribution, iterative at 0.1,0.5,1% : <b>i01</b>, <b>i05</b>, <b>i10</b><br />
	for concave: edge restrictions : <b>001</b> to <b>10</b> for 0.01 to 1.0<br />		for convex: <br />
			: <b>s</b>eparate polygons<br />
			: <b>i</b>nclusive polygon<br />
			for concave:<br />
			: edge restrictions : <b>001</b> to <b>10</b> for 0.01 to 1.0<br />

	<u><b>K</b>ernels or <b>H</b>armonic mean contours</u>		<u><b>K</b>ernels or <b>H</b>armonic mean contours</u>

	~~contours~~ : <b>d</b>ensity, <b>l</b>ocation inclusive (fitted to locations)<br />		Contours:
	Harmonic mean options : Locations <b>c</b>entred, <b>u</b>nmodified<br />		: <b>d</b>ensity, <b>l</b>ocation inclusive (fitted to locations)<br />
	Kernel type : <b>f</b>ixed, <b>t</b>ail weighted, <b>c</b>ore weighted<br />		Harmonic mean options:<br />
	~~kernel Smoothing~~ : multiplier <b>01</b> to <b>20</b>, lscv <b>I</b>nflection, lscv <b>L</b>ocal min., lscv <b>G</b>lobal min<br />		: Locations <b>c</b>entred, <b>u</b>nmodified<br />
	~~matrix~~ : number of cells : e.g. <b>n40</b>, size of cells e.g. <b>s10</b~~><br /~~>		Kernel type:<br />
			: <b>f</b>ixed, <b>t</b>ail weighted, <b>c</b>ore weighted<br />
			Kernel smoothing:<br />
			: multiplier <b>01</b> to <b>20</b>, lscv <b>I</b>nflection, lscv <b>L</b>ocal min., lscv <b>G</b>lobal min<br />
			Matrix:<br />
			: number of cells : e.g. <b>n40</b>, size of cells e.g. <b>s10</b>

	<u>Cores</u>		<u>Cores</u>

Admin at 11:47, 8 November 2014

2014-11-08T11:47:00Z

← Older revision		Revision as of 11:47, 8 November 2014
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	== Introduction ==		== Introduction ==

	Output files options are offered in the fourth column of the user interface for [[Location Analysis\|Location Analysis]], [[Overlap Analysis\|Overlap]], [[Interaction Analysis\|Interaction]], [[[[Habitat Analysis\|Habitat]] and [[Modelling Analysis\|Modelling]]. The options that are offered are dependent upon the analysis being conducted.		Output files options are offered in the fourth column of the user interface for [[Location Analysis\|Location Analysis]], [[Overlap Analysis\|Overlap]], [[Interaction Analysis\|Interaction]], [[Habitat Analysis\|Habitat]] and [[Modelling Analysis\|Modelling]]. The options that are offered are dependent upon the analysis being conducted.

	If an output file tick box is visible, selecting this tick box will cause the creation of a permanent file with a default filename created by taking the name (and folder) of the input file and adding a code identifying the analysis used to create it. If the tickbox is not selected the output file is given a temporary name and will be overwritten by subsequent analyses. To choose a different filename from the default, select the tickbox and type in the text box or press browse to search your files. If you choose an existing file you will be asked whether you want to overwrite that file, if you choose '''Yes''' the existing file will be renamed to overwrite.bak in the Ranges directory, and the new file will be created after the '''Run Analysis''' button is pressed.		If an output file tick box is visible, selecting this tick box will cause the creation of a permanent file with a default filename created by taking the name (and folder) of the input file and adding a code identifying the analysis used to create it. If the tickbox is not selected the output file is given a temporary name and will be overwritten by subsequent analyses. To choose a different filename from the default, select the tickbox and type in the text box or press browse to search your files. If you choose an existing file you will be asked whether you want to overwrite that file, if you choose '''Yes''' the existing file will be renamed to overwrite.bak in the Ranges directory, and the new file will be created after the '''Run Analysis''' button is pressed.
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	<u>Conve<b>X</b> polygons</u>		<u>Conve<b>X</b> polygons</u>

	peeled from :		peeled from:

	f = <b>f</b>ocal site		: f = <b>f</b>ocal site <br />
			: h = <b>h</b>armonic mean <br />
			: k = <b>k</b>ernel centre <br />
			: a = <b>a</b>rithmetic mean centre <br />
			: r = <b>r</b>ecalculated arithmetic mean <br />

	~~h =~~ <b>h</b>~~armonic mean~~		<u>Conca<b>V</b>e polygons</u>

	~~k = <b>k~~</b>~~ernel centre~~

	~~a = <b>a~~</b>~~rithmetic mean centre~~

	~~r = <b>r</b>ecalculated arithmetic mean~~		edge restriction:

	~~<u>Conca<b>V</b>e polygons</u>~~		: <b>01</b> to <b>09</b> for 0.1 to 0.9, or in metres : 10m

	~~Edge estriction~~ <b>01</b> to <b>09</b> for 0.1 to 0.9, or in metres : 10m

	<u><b>E</b>llipses</u>		<u><b>E</b>llipses</u>
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	<u><b>C</b>lusters</u>		<u><b>C</b>lusters</u>

	conca<b>V</b>e or conve<b>X</b>		conca<b>V</b>e or conve<b>X</b><br />
			joining priority : <b>n</b>earest neighbour, centroid<br />
	joining priority : <b>n</b>earest neighbour, centroid		<b>o</b>bjective cores :<br />
			: outlier exclusion: <b>t</b>runcation of distance distribution, iterative at 0.1,0.5,1% : <b>i01</b>, <b>i05</b>, <b>i10</b><br />
	<b>o</b>bjective cores :		for convex: <b>s</b>eparate polygons, <b>i</b>nclusive polygon<br />
			for concave: edge restrictions : <b>001</b> to <b>10</b> for 0.01 to 1.0<br />
	outlier exclusion : <b>t</b>runcation of distance distribution, iterative at 0.1,0.5,1% : <b>i01</b>, <b>i05</b>, <b>i10</b>

	for convex : <b>s</b>eparate polygons, <b>i</b>nclusive polygon

	for concave : edge restrictions : <b>001</b> to <b>10</b> for 0.01 to 1.0

	<u><b>K</b>ernels or <b>H</b>armonic mean contours</u>		<u><b>K</b>ernels or <b>H</b>armonic mean contours</u>

	contours : <b>d</b>ensity, <b>l</b>ocation inclusive (fitted to locations)		contours : <b>d</b>ensity, <b>l</b>ocation inclusive (fitted to locations)<br />
			Harmonic mean options : Locations <b>c</b>entred, <b>u</b>nmodified<br />
	Harmonic mean options : Locations <b>c</b>entred, <b>u</b>nmodified		Kernel type : <b>f</b>ixed, <b>t</b>ail weighted, <b>c</b>ore weighted<br />
			kernel Smoothing : multiplier <b>01</b> to <b>20</b>, lscv <b>I</b>nflection, lscv <b>L</b>ocal min., lscv <b>G</b>lobal min<br />
	Kernel type : <b>f</b>ixed, <b>t</b>ail weighted, <b>c</b>ore weighted		matrix : number of cells : e.g. <b>n40</b>, size of cells e.g. <b>s10</b><br />

	kernel Smoothing : multiplier <b>01</b> to <b>20</b>, lscv <b>I</b>nflection, lscv <b>L</b>ocal min., lscv <b>G</b>lobal min

	matrix : number of cells : e.g. <b>n40</b>, size of cells e.g. <b>s10</b>

	<u>Cores</u>		<u>Cores</u>

	~~Examples~~:<br/>		e.g.:<br/>
	selected cores : <b>_50%75%95%</b><br/>		: selected cores : <b>_50%75%95%</b><br/>
	5% intervals : <b>_25to100%</b>		: 5% intervals : <b>_25to100%</b>

Admin at 11:42, 8 November 2014

2014-11-08T11:42:12Z

← Older revision		Revision as of 11:42, 8 November 2014
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	The following codes are added to default output filenames, enabling the analysis that created them to be identified. Codes are highlighted in bold.		The following codes are added to default output filenames, enabling the analysis that created them to be identified. Codes are highlighted in bold.

	# Conve<b>X</b> polygons		<u>Conve<b>X</b> polygons</u>

	peeled from :		peeled from :
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	r = <b>r</b>ecalculated arithmetic mean		r = <b>r</b>ecalculated arithmetic mean

	Conca<b>V</b>e polygons		<u>Conca<b>V</b>e polygons</u>

	Edge estriction <b>01</b> to <b>09</b> for 0.1 to 0.9, or in metres : 10m		Edge estriction <b>01</b> to <b>09</b> for 0.1 to 0.9, or in metres : 10m

	<b>E</b>llipses		<u><b>E</b>llipses</u>

	<b>C</b>lusters		<u><b>C</b>lusters</u>

	conca<b>V</b>e or conve<b>X</b>		conca<b>V</b>e or conve<b>X</b>
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	for concave : edge restrictions : <b>001</b> to <b>10</b> for 0.01 to 1.0		for concave : edge restrictions : <b>001</b> to <b>10</b> for 0.01 to 1.0

	<b>K</b>ernels or <b>H</b>armonic mean contours		<u><b>K</b>ernels or <b>H</b>armonic mean contours</u>

	contours : <b>d</b>ensity, <b>l</b>ocation inclusive (fitted to locations)		contours : <b>d</b>ensity, <b>l</b>ocation inclusive (fitted to locations)
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	matrix : number of cells : e.g. <b>n40</b>, size of cells e.g. <b>s10</b>		matrix : number of cells : e.g. <b>n40</b>, size of cells e.g. <b>s10</b>

	~~Cores~~		<u>Cores</u>

	~~e.g.~~

	~~selected cores :~~ <b>~~_50%75%95%~~</b>

			Examples:<br/>
			selected cores : <b>_50%75%95%</b><br/>
	5% intervals : <b>_25to100%</b>		5% intervals : <b>_25to100%</b>

Admin at 11:40, 8 November 2014

2014-11-08T11:40:52Z

← Older revision		Revision as of 11:40, 8 November 2014
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	The following codes are added to default output filenames, enabling the analysis that created them to be identified. Codes are highlighted in bold.		The following codes are added to default output filenames, enabling the analysis that created them to be identified. Codes are highlighted in bold.

	~~<u>~~Conve<b>X</b> polygons~~</u>~~		# Conve<b>X</b> polygons

	peeled from :		peeled from :
Line 33:		Line 33:
	r = <b>r</b>ecalculated arithmetic mean		r = <b>r</b>ecalculated arithmetic mean

	~~<u>~~Conca<b>V</b>e polygons~~</u>~~		Conca<b>V</b>e polygons

	Edge estriction <b>01</b> to <b>09</b> for 0.1 to 0.9, or in metres : 10m		Edge estriction <b>01</b> to <b>09</b> for 0.1 to 0.9, or in metres : 10m

Admin at 11:39, 8 November 2014

2014-11-08T11:39:57Z

← Older revision		Revision as of 11:39, 8 November 2014
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	All data files in Ranges contain text, and can therefore be viewed in text editors, except for raster maps (''.rst'') and image files (''.ima'') which are byte arrays. Coverage of the following output files can be seen in File Types.		All data files in Ranges contain text, and can therefore be viewed in text editors, except for raster maps (''.rst'') and image files (''.ima'') which are byte arrays. Coverage of the following output files can be seen in File Types.

	==== Statistics files ~~(''.csv'')~~		==== Statistics files ====

	~~This is a file~~ with column headers that can be opened in ~~Stats Viewer~~, double-clicked to open in Microsoft Excel or imported to an alternative spreadsheet.		These are files with column headers saved in comma-separated variable ('',csv'') format that can be opened in the Statistics window, double-clicked to open in Microsoft Excel or imported to an alternative spreadsheet.

	==== Ranges files ====		==== Ranges files ====
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	peeled from :		peeled from :

	f = ~~focal~~ site		f = <b>f</b>ocal site

	h = ~~harmonic~~ mean		h = <b>h</b>armonic mean

	k = ~~kernel~~ centre		k = <b>k</b>ernel centre

	a = ~~arithmetic~~ mean centre		a = <b>a</b>rithmetic mean centre

	r = ~~recalculated~~ arithmetic mean		r = <b>r</b>ecalculated arithmetic mean

	~~ConcaVe~~ polygons		<u>Conca<b>V</b>e polygons</u>

	Edge estriction 01 to 09 for 0.1 to 0.9, or in metres : 10m		Edge estriction <b>01</b> to <b>09</b> for 0.1 to 0.9, or in metres : 10m

	~~Ellipses~~		<b>E</b>llipses

	~~Clusters~~		<b>C</b>lusters

	~~concaVe~~ or ~~conveX~~		conca<b>V</b>e or conve<b>X</b>

	joining priority : ~~nearest~~ neighbour, centroid		joining priority : <b>n</b>earest neighbour, centroid

	~~objective~~ cores :		<b>o</b>bjective cores :

	outlier exclusion : ~~truncation~~ of distance distribution, iterative at 0.1,0.5,1% : i01, i05, i10		outlier exclusion : <b>t</b>runcation of distance distribution, iterative at 0.1,0.5,1% : <b>i01</b>, <b>i05</b>, <b>i10</b>

	for convex : ~~separate~~ polygons, ~~inclusive~~ polygon		for convex : <b>s</b>eparate polygons, <b>i</b>nclusive polygon

	for concave : edge restrictions : 001 to 10 for 0.01 to 1.0		for concave : edge restrictions : <b>001</b> to <b>10</b> for 0.01 to 1.0

	~~Kernels~~ or ~~Harmonic~~ mean contours		<b>K</b>ernels or <b>H</b>armonic mean contours

	contours : ~~density~~, ~~location~~ inclusive (fitted to locations)		contours : <b>d</b>ensity, <b>l</b>ocation inclusive (fitted to locations)

	Harmonic mean options : Locations ~~centred~~, ~~unmodified~~		Harmonic mean options : Locations <b>c</b>entred, <b>u</b>nmodified

	Kernel type : ~~fixed~~, ~~tail~~ weighted, ~~core~~ weighted		Kernel type : <b>f</b>ixed, <b>t</b>ail weighted, <b>c</b>ore weighted

	kernel Smoothing : multiplier 01 to 20, lscv ~~Inflection~~, lscv ~~Local~~ min., lscv ~~Global~~ min		kernel Smoothing : multiplier <b>01</b> to <b>20</b>, lscv <b>I</b>nflection, lscv <b>L</b>ocal min., lscv <b>G</b>lobal min

	matrix : number of cells : e.g. n40, size of cells e.g. s10		matrix : number of cells : e.g. <b>n40</b>, size of cells e.g. <b>s10</b>

	Cores		Cores
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	e.g.		e.g.

	selected cores : _50%75%95%		selected cores : <b>_50%75%95%</b>

	5% intervals : _25to100%		5% intervals : <b>_25to100%</b>

Admin: Created page with "== Introduction == Output files options are offered in the fourth column of the user interface for Location Analysis, Overlap, In..."

2014-11-08T11:33:27Z

Created page with "== Introduction == Output files options are offered in the fourth column of the user interface for Location Analysis, Overlap, In..."

New page

== Introduction ==

Output files options are offered in the fourth column of the user interface for [[Location Analysis|Location Analysis]], [[Overlap Analysis|Overlap]], [[Interaction Analysis|Interaction]], [[[[Habitat Analysis|Habitat]] and [[Modelling Analysis|Modelling]]. The options that are offered are dependent upon the analysis being conducted.

If an output file tick box is visible, selecting this tick box will cause the creation of a permanent file with a default filename created by taking the name (and folder) of the input file and adding a code identifying the analysis used to create it. If the tickbox is not selected the output file is given a temporary name and will be overwritten by subsequent analyses. To choose a different filename from the default, select the tickbox and type in the text box or press browse to search your files. If you choose an existing file you will be asked whether you want to overwrite that file, if you choose '''Yes''' the existing file will be renamed to overwrite.bak in the Ranges directory, and the new file will be created after the '''Run Analysis''' button is pressed.

All data files in Ranges contain text, and can therefore be viewed in text editors, except for raster maps (''.rst'') and image files (''.ima'') which are byte arrays. Coverage of the following output files can be seen in File Types.

==== Statistics files (''.csv'')

This is a file with column headers that can be opened in Stats Viewer, double-clicked to open in Microsoft Excel or imported to an alternative spreadsheet.

==== Ranges files ====

Other files are mainly to be used as inputs for other Ranges analyses and for display as maps and as plots. They can also be viewed in a spreadsheet but the data are arranged to save space rather than for ease of interpretation.

== Output filename codes for location analyses ==

The following codes are added to default output filenames, enabling the analysis that created them to be identified. Codes are highlighted in bold.

<u>Conve<b>X</b> polygons</u>

peeled from :

f = focal site

h = harmonic mean

k = kernel centre

a = arithmetic mean centre

r = recalculated arithmetic mean

ConcaVe polygons

Edge estriction 01 to 09 for 0.1 to 0.9, or in metres : 10m

Ellipses

Clusters

concaVe or conveX

joining priority : nearest neighbour, centroid

objective cores :

outlier exclusion : truncation of distance distribution, iterative at 0.1,0.5,1% : i01, i05, i10

for convex : separate polygons, inclusive polygon

for concave : edge restrictions : 001 to 10 for 0.01 to 1.0

Kernels or Harmonic mean contours

contours : density, location inclusive (fitted to locations)

Harmonic mean options : Locations centred, unmodified

Kernel type : fixed, tail weighted, core weighted

kernel Smoothing : multiplier 01 to 20, lscv Inflection, lscv Local min., lscv Global min

matrix : number of cells : e.g. n40, size of cells e.g. s10

Cores

e.g.

selected cores : _50%75%95%

5% intervals : _25to100%