Output File Headers: Difference between revisions

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{| class="wikitable"
{| class="wikitable"
| style="width: 200px;" |Habitat || **TODO
| style="width: 200px;" |Habitat || The habitat group name
|-
|-
|Core || **TODO
|Core || The core %
|-
|-
|ExclusionStatus || **TODO
|ExclusionStatus || Habitat Excluded or not
|-
|-
|rObserved || **TODO
|rObserved || Observed Pearson's r
|-
|-
|bObserved || **TODO
|bObserved || Observed slope
|-
|-
|SEbObserved || **TODO
|SEbObserved || Observed standard error of slope
|-
|-
|cObserved || **TODO
|cObserved || **TODO
|-
|-
|0-Core%Observed || **TODO
|0-Core%Observed || Number of observed habitat cores with zero core area
|-
|-
|0-Habitat%Observed || **TODO
|0-Habitat%Observed || Number of observed habitat cores without this habitat in the core
|-
|-
|rMeanRandom || **TODO
|rMeanRandom || Mean Pearson's r for randomly placed range cores
|-
|-
|rMedianRandom || **TODO
|rMedianRandom || Median Pearson's r for randomly placed range cores
|-
|-
|z || **TODO
|z || z for for randomly placed range cores
|-
|-
|+r95%CL || **TODO
|+r95%CL || **TODO  
|-
|-
|r95%CL || **TODO
|r95%CL || **TODO
Line 1,011: Line 1,011:
|Beyondr || **TODO
|Beyondr || **TODO
|-
|-
|bMeanRandom || **TODO
|bMeanRandom || Mean slope for randomly placed range cores
|-
|-
|SEbMeanRandom || **TODO
|SEbMeanRandom || Mean standard error of slope for randomly placed range cores
|-
|-
|cMeanRandom || **TODO
|cMeanRandom || **TODO
Line 1,053: Line 1,053:
|Tag days || Total number of days for all individuals
|Tag days || Total number of days for all individuals
|}
|}
**TODO comparison statistics

Revision as of 15:47, 7 November 2014

This page describes the column headers for statistics files. These are output from Ranges analyses and can be loaded in the Statistics window.

Inter-location headings (all values)

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
LocE Location easting
LocN Location northing
Headings(degrees) Heading angle

Inter-location headings (means for each range)

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
N Number of locations
Average Average heading of locations in degrees
SE+- Standard Error of heading
GeoMean Geometric mean heading
SE*/ Standard Error of geometric heading (when using logs you must multiply and divide rather than add and subtract the SE)

Inter-location distances (all values)

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
LocE Location easting
LocN Location northing
Distances(m) Distance of location in metres
Dispersal(distx) 1 if animal has dispersed by this location, 1 otherwise (only when dispersal detector implemented).
LQV1 as specified in the location file
... LQVn as specified in the location file

NB. It is possible to reimport this csv file and then use distances as an LQV. This means that they can be used for analyses of, say, "only locations at least 100m from den".

Inter-location distances (means for each range)

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
N Number of locations
Average Average distance of locations (m)
SE+- Standard Error of distance
GeoMean Geometric mean distance
SE*/ Standard Error of geometric distance (when using logs you must multiply and divide rather than add and subtract the SE)

Inter-location times (all values)

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
LocE Location easting
LocN Location northing
Times(minutes) Time between locations

Inter-location times (means for each range)

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
N Number of locations
Average Average time between locations in minutes
SE+- Standard Error of time between locations
GeoMean Geometric mean time between locations
SE*/ Standard Error of geometric time between locations (when using logs you must multiply and divide rather than add and subtract the SE)

Inter-location speeds (all values)

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
LocE Location easting
LocN Location northing
Speeds(km/h) Speeds in kilometres per hour

Inter-location speeds (means for each range)

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
N Number of locations
Average Average spped
SE+- Standard Error of speed
GeoMean Geometric mean speed
SE*/ Standard Error of geometric speed (when using logs you must multiply and divide rather than add and subtract the SE)

Convex polygons

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
CentE Easting for the range centre
CentN Northing for the range centre
Span Maximum distance between locations
Mean Mean distance of locations from range centre
Median Median distance of locations from range centre
Max Maximum distance of locations from range centre
dummy Unused variable
Core1 Core percentage
Area Area of that core (ha)
Core2 Core percentage
Area Area of that core (ha)
Core3 Core percentage
Area Area of that core (ha)
etc

Concave polygons

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
Span Maximum distance between locations
dummy Unused variable
dummy Unused variable
dummy Unused variable
dummy Unused variable
dummy Unused variable
dummy Unused variable
Core% Core percentage, always 100 for concave polygons
Area Area of that core (ha)

Neighbour-linkage

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
Core1 Core percentage
Area Area of that core (ha)
Nuclei Number of nuclei
Partial Partial area
DivLocs Simpson's index for location diversity
DivArea Simpson's index for area diversity
Core2 Core percentage
Area Area of that core (ha)
Nuclei Number of nuclei
Partial Partial area
DivLocs Simpson's index for location diversity
DivArea Simpson's index for area diversity
Core3 Core percentage
Area Area of that core (ha)
Nuclei Number of nuclei
Partial Partial area
DivLocs Simpson's index for location diversity
DivArea Simpson's index for area diversity
Core1 Core percentage
Area Area of that core (ha)
etc

Ellipses

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
CentE Easting for the range centre
CentN Northing for the range centre
MARAD Radius of the major axis for the maximum core size selected
MIRAD Radius of the minor axis for the maximum core size selected
THETA Angle major axis is inclined from horizontal
X-VAR Variance in eastings
Y-VAR Variance in northings
COVAR Covariance of eastings x northings
r-STAT correlation coefficient
JTAsym Standard deviation of the major axis divided by that of the minor axis.
Core1 Core percentage
Area Area of that core (ha)
Core2 Core percentage
Area Area of that core (ha) etc

Harmonic mean contours

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
CentE Arithmetic mean of eastings (range centre if with CentN)
CentN Arithmetic mean of northings (range centre if with CentE)
Value Density score at the central location
Spread Range spread at central location
Dispersion An index of dispersion of the distribution is given by the peak density value (at the range centre

location) divided by the standard deviation of the density value across all the locations

Skew An index of skew in the distribution is given by the Euclidean distance between the arithmetic mean centre and the location with the peak density value, divided by the standard deviation of the density value across all the locations
Kurtosis Kurtosis of the location distribution
hRef Not relevant to Harmonic means
hUsed Not relevant to Harmonic means
Core1 Core percentage
Area Area of that core (ha)
Core2 Core percentage
Area Area of that core (ha)
Core3 Core percentage
Area Area of that core (ha)
etc

Kernel contours

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
CentE Arithmetic mean of eastings (range centre if with CentN)
CentN Arithmetic mean of northings (range centre if with CentE)
Value Density score at the central location
Spread Range spread at central location
Dispersion An index of dispersion of the distribution is given by the peak density value (at the range centre

location) divided by the standard deviation of the density value across all the locations

Skew An index of skew in the distribution is given by the Euclidean distance between the arithmetic mean centre and the location with the peak density value, divided by the standard deviation of the density value across all the locations
Kurtosis Kurtosis of the location distribution
hRef Not relevant to Harmonic means
hUsed Not relevant to Harmonic means
xhRef Multiple of hRef used (user defined or calculated by LSCV)
interval Size (m) of lattice cells used in kernel estimation
Core1 Core percentage
Area Area of that core (ha)
Core2 Core percentage
Area Area of that core (ha)
Core3 Core percentage
Area Area of that core (ha)
etc

Range overlap

overlap_ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
CentE Arithmetic mean of eastings (range centre if with CentN)
CORE(%) !! Core percentage
ID1(%) Percentage of overlapID range overlaps with range ID1 for this core
ID2(%) Percentage of overlapID range overlaps with range ID2 for this core
ID3(%) Percentage of overlapID range overlaps with range ID3 for this core
ID4(%) Percentage of overlapID range overlaps with range ID4 for this core
etc
ID1(m2) Area of overlap for overlapID range and range ID1 for this core
ID2(m2) Area of overlap for overlapID range and range ID2 for this core
ID3(m2) Area of overlap for overlapID range and range ID3 for this core
ID4(m2) Area of overlap for overlapID range and range ID4 for this core
etc

Overlap of range on locations

overlap_ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
CentE Arithmetic mean of eastings (range centre if with CentN)
CORE(%) !! Core percentage
ID1(%) Percentage of overlapID range overlaps with locations in range ID1 for this core
ID2(%) Percentage of overlapID range overlaps with locations in range ID2 for this core
ID3(%) Percentage of overlapID range overlaps with locations in range ID3 for this core
ID4(%) Percentage of overlapID range overlaps with locations in range ID4 for this core

Autocorrelations

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
SIpast1(h) **TODO **
SIpast2(h) **TODO **
Mins **TODO **
1xMins **TODO **
2xMins **TODO **
3xMins **TODO **
4xMins **TODO **
5xMins **TODO **
etc

Dynamic interactions

range1ID First individual's identification number
AGE First individual's age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX First individual's sex (e.g. 1 = Male, 2 = Female)
MONTH First individual's month track started in
YEAR First individual's year track started in
FOC-E First individual's focal site Easting (e.g. nest, den, trap site etc)
FOC-N First individual's focal site Northing (e.g. nest, den, trap site etc)
range2ID Second individual's identification number
AGE Second individual's age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Second individual's sex (e.g. 1 = Male, 2 = Female)
MONTH Second individual's month track started in
YEAR Second individual's year track started in
FOC-E Second individual's focal site Easting (e.g. nest, den, trap site etc)
FOC-N Second individual's focal site Northing (e.g. nest, den, trap site etc)
Nobs Number of observed distances
AMEANObs Arithmetic mean of observed distances
SUMObs Sum of observed distances
SoSobs Sum of Squares of observed distances
GMEANobs Geometric mean of the observed distances
LSUMobs Sum of logged observed distances
LSoSobs Sum of squares of logged observed distances
MEDobs Median Observed distance
Nran Number of random locations
AMEANran Arithmetic mean of random distances
SUMran Sum of random distances
SoSran Sum of Squares of random distances
GMEANran Geometric mean of the random distances
LSUMran Sum of logged random distances
LSoSran Sum of squares of logged random distances
MEDran Median random distance
JacobsAMEAN Jacob's index of arithmetic mean distances
JacobsGMEAN Jacob's index of geometric mean distances
JacobsMED Jacob's index of median distances

Location-point distances

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
Nobs Number of observed distances
AMEANObs Arithmetic mean of observed distances
SUMObs Sum of observed distances
SoSobs Sum of Squares of observed distances
GMEANobs Geometric mean of the observed distances
LSUMobs Sum of logged observed distances
LSoSobs Sum of squares of logged observed distances
MEDobs Median Observed distance
Nran Number of random locations
AMEANran Arithmetic mean of random distances
SUMran Sum of random distances
SoSran Sum of Squares of random distances
GMEANran Geometric mean of the random distances
LSUMran Sum of logged random distances
LSoSran Sum of squares of logged random distances
MEDran Median random distance
JacobsAMEAN Jacob's index of arithmetic mean distances
JacobsGMEAN Jacob's index of geometric mean distances
JacobsMED Jacob's index of median distances


Range centre spacing

Nobs Number of observed distances
MEANobs Arithmetic mean of observed distances
SUMobs Sum of observed distances
SoSobs Sum of Squares of observed distances
SEobs Standard Error of observed distances
AREA Area of range
MEANest Estimated mean distance
SEest Standard error of estimated distances
t-obs/est Student's t-test for regular spacing of estimated observations
Nran Number of random locations
MEANran Arithmetic mean of random distances
SUMran Sum of random distances
SoSran Sum of Squares of random distances
SEran Standard error of random distances
t-obs/ran Student's t-test for regular spacing of random estimates

Habitat in a map rectangle

W-edge Western edge
E-edge Eastern edge
S-edge Southern Edge
N-edge Northern edge
Area Area of assessed rectangle
HabitatGroup1 % of the area made up of this habitat
HabitatGroup2 % of the area made up of this habitat
HabitatGroup3 % of the area made up of this habitat
etc

Habitat in a map circle

cent-E Western edge
cent-N Circle centre northing
radius radius of circle in metres
Area Area of circle
HabitatGroup1 % of the area made up of this habitat
HabitatGroup2 % of the area made up of this habitat
HabitatGroup3 % of the area made up of this habitat
etc

Habitat content of ranges

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
Core1 Core percent
Area Area of core
HabitatGroup1 % of the area made up of this habitat
HabitatGroup2 % of the area made up of this habitat
HabitatGroup3 % of the area made up of this habitat
etc
Core2 Core size
Area Area of core 2
HabitatGroup1 % of the area made up of this habitat
HabitatGroup2 % of the area made up of this habitat
HabitatGroup3 % of the area made up of this habitat
etc

Habitat points within ranges

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
Core1 Core percent
Area Area of core 1
sites Number of sites within core 1
Core2 Core percent
Area Area of core 2
sites Number of sites within core 2
etc

Habitat at locations

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
N-locs Number of locations
HabitatGroup1 % of the locations (or ellipse area if error ellipses) of this habitat
HabitatGroup2 % of the locations (or ellipse area if error ellipses) of this habitat
HabitatGroup3 % of the locations (or ellipse area if error ellipses) of this habitat
etc

Habitat preference in ranges

ID Individual identification number
AGE Age (e.g. 1 = Juvenile, 2 = Yearling, 3 = Adult)
SEX Sex (e.g. 1 = Male, 2 = Female)
MONTH Month track started in
YEAR Year track started in
FOC-E Focal site Easting (e.g. nest, den, trap site etc)
FOC-N Focal site Northing (e.g. nest, den, trap site etc)
Core1 Core percent
Area Area of core
HabitatGroup1 % of the area made up of this habitat
HabitatGroup2 % of the area made up of this habitat
HabitatGroup3 % of the area made up of this habitat
etc
Core2 Core size
Area Area of core 2
HabitatGroup1 % of the area made up of this habitat
HabitatGroup2 % of the area made up of this habitat
HabitatGroup3 % of the area made up of this habitat
etc
N-locs Number of locations
HabitatGroup1 % of the locations (or ellipse area if error ellipses) of this habitat
HabitatGroup2 % of the locations (or ellipse area if error ellipses) of this habitat
HabitatGroup3 % of the locations (or ellipse area if error ellipses) of this habitat
etc

Resource area dependence

Habitat The habitat group name
Core The core %
ExclusionStatus Habitat Excluded or not
rObserved Observed Pearson's r
bObserved Observed slope
SEbObserved Observed standard error of slope
cObserved **TODO
0-Core%Observed Number of observed habitat cores with zero core area
0-Habitat%Observed Number of observed habitat cores without this habitat in the core
rMeanRandom Mean Pearson's r for randomly placed range cores
rMedianRandom Median Pearson's r for randomly placed range cores
z z for for randomly placed range cores
+r95%CL **TODO
r95%CL **TODO
Beyondr **TODO
bMeanRandom Mean slope for randomly placed range cores
SEbMeanRandom Mean standard error of slope for randomly placed range cores
cMeanRandom **TODO
0-habitat%Random **TODO

Kaplan Meier survival

File The name of the analysis survival file
Dates The dates set for the analysis
Interval the interval number
Ending the end date of the interval
Present At Start Individuals present at start of interval
Present At End Individuals present at end of interval
Censor Dead Individuals died during interval
Censor Lost Individuals lost during interval
Censor Lived Individuals present at start of interval
Censor Add Individuals added during interval
Survival Total Individuals survived for interval
Survival Decrease Decrease in individuals for interval
Variance Greenwood Greenwood variance for interval
Variance Cox/Oates Cox/Oates variance for interval
Tag days Total number of days for all individuals